pro-i. Biosphere Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management System Supported by the European Commission through its FP 7 research funding programme
Review of WP 4: Technical and infrastructure coordination Lyubomir Penev, Pavel Stoev, Teodor Georgiev Pro-i. Biosphere Leiden meeting, 11 -15 February 2013, Leiden
General aims and framework Studies, actions, promotion, monitoring, adoption, strategies and agreement on: technical and semantic interoperability between biodiversity platforms common mark-up standards and schemas exchange of biodiversity-specific information, such as localities, treatments, keys, names, and references
Three key objectives Increased cooperation between biodiversity EU and non. EU projects and biodiversity platforms, current and previously funded Improved taxon treatment servers; cooperation and coordination between electronic registers of taxon names Increased technical and semantic interoperability, through improvement of the XML schemas and standards
Partners involved in WP 4 3 PM 8 PM 7 PM 3 PM 2 PM
Tasks Task 4. 1 Improve technical cooperation and interoperability at the einfrastructure level Lead: FUB-BGBM Participants: Naturalis, PENSOFT, RBGK, Plazi Start: December 2012 End: August 2014 Task 4. 2 Promote and monitor the development and adoption of common mark-up standards and interoperability between schemas Lead: Plazi Participants: Naturalis, FUB-BGBM, PENSOFT, RBGK Start: December 2012 End: August 2014
Deliverables Number Deliverable title Lead Nature Due date beneficiary D 4. 1 FUB-BGBM Report December 2013 D 4. 2 Report on strategies for improved cooperation and interoperability between infrastructures Report on a strategy for improvement & interoperability of the XML schemas PLAZI Report December 2013
Milestones Number Milestone name Lead beneficiary MS 13 Workshop on how to improve technical cooperation and interoperability at the e-infrastructure level FUB-BGBM MS 14 Workshop on how to promote the development PLAZI & adoption of common mark-up standards & interoperability Due date Comments October Report and presentations 2013 on-line October Report and presentations 2013 on-line
Pilot studies Task 4. 1 Improve technical cooperation and interoperability at the e-infrastructure level (lead FUB-BGBM) 1. Pensoft-Plazi-FUB-BGBM: interoperability between taxonomic working platforms (CDM, Scratchpads), treatment repositories (EOL, Plazi, Species-ID), and electronic registers (IPNI, Index Fungorum, Myco. Bank, Zoo. Bank). 2. Plazi-FUB-BGBM: pipelining information from XML-based PLAZI repositories to CDMstores. 3. Plazi -FUB-BGBM: access to PLAZI data through EDIT at human-readable and service-level Task 4. 2 Promote and monitor the development and adoption of common mark-up standards and interoperability (lead: Plazi) 1. Pensoft-Plazi: interoperability between taxon treatments from both legacy and prospective literature from three organismic domains (fungi, plants and animals) 2. Pensoft: a common XML-query model for automated registration of higher plants (IPNI), fungi (Index Fungorum, Myco. Bank) and animals (Zoo. Bank) 3. Plazi: Revision of a tool (Chara. Parser) that generates identification keys by reusing parsed characters from treatments
Background and solutions Improvement of existing workflows and schemas Support by currently developed new workflows and tools Automated registration of taxonomic/nomenclatural acts Collaborative authoring and publishing platform Biodiversity Data Journal
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