Курс: Генно-инженерные и белковые технологии в физиологии растений и сельском хозяйстве Лекции 1 и 2: Cтруктурно-функциональная организация генов и белков. Экспрессия генов и биосинтез белка, клеточный контроль этих процессов. Гены продуктивности растений.
Измерения: 1 сантиметр (cм) = 10 -2 метра (м) 1 миллиметр (мм) = 10 -3 м 1 микрометр ( м) = 10 -3 мм = 10 -6 м 1 нанометр (нм) = 10 -3 м = 10 -9 м
Уровни организации (международная классификация, 2011 год): Ø Atoms Ø Molecules Ø Assemblies Ø Cells Ø Tissue Ø Organ system Ø Organism Ø Population
Растительные клетки (99% биомассы на планете) – вся пища, топливо, материалы, витамины и т. д.
Химический состав типичной клетки Макромолекулы (биополимеры)
Общий принцип образования и распада биополимеров синтез……… распад. . .
Всего 20 аминокислот участвует в образовании белков и других реакциях (международные названия и классификация):
Аденозинтрифосфат - АТФ • АТФ – нуклеотид • предшественник биосинтеза нуклеиновых кислот • источник энергии • медиатор, нейротрансмиттер, регулятор
Строение нуклеиновых кислот:
Строение липидов:
Строение липидов:
• Разнообразие комбинаций трех полимеров определяет разнообразие живого на планете. Растения, животные и грибы имеют одинаковые «мономеры» и принципы их соединения в макромолекулы, но благодаря отличиям в молекулярной структуре и организации, они могут сильно отличаться на клеточной и организменном уровне.
Семь функциональных групп, которые наиболее важны в биохимических процессах: – Гидроксильная – Карбонильная – Карбоксильная – Амино – Сульфгидрильная – Фосфатная – Метильная
CHEMICAL GROUP Hydroxyl Carbonyl Carboxyl STRUCTURE (may be written HO—) In a hydroxyl group (—OH), a hydrogen atom is bonded to an oxygen atom, which in turn is bonded to the carbon skeleton of the organic molecule. (Do not confuse this functional group with the hydroxide ion, OH–. ) NAME OF COMPOUND The carbonyl group ( CO) consists of a carbon atom joined to an oxygen atom by a double bond. When an oxygen atom is double-bonded to a carbon atom that is also bonded to an —OH group, the entire assembly of atoms is called a carboxyl group (—COOH). Alcohols (their specific names usually end in -ol) Ketones if the carbonyl group is within a carbon skeleton Carboxylic acids, or organic acids Aldehydes if the carbonyl group is at the end of the carbon skeleton EXAMPLE Ethanol, the alcohol present in alcoholic beverages Acetone, the simplest ketone Acetic acid, which gives vinegar its sour taste Propanal, an aldehyde FUNCTIONAL PROPERTIES Is polar as a result of the electrons spending more time near the electronegative oxygen atom. Can form hydrogen bonds with water molecules, helping dissolve organic compounds such as sugars. A ketone and an aldehyde may be structural isomers with different properties, as is the case for acetone and propanal. These two groups are also found in sugars, giving rise to two major groups of sugars: aldoses (containing an aldehyde) and ketoses (containing a ketone). Has acidic properties because the covalent bond between oxygen and hydrogen is so polar; for example, Acetic acid Acetate ion Found in cells in the ionized form with a charge of 1– and called a carboxylate ion (here, specifically, the acetate ion).
Fig. 4 -10 b CHEMICAL GROUP Amino Sulfhydryl Methyl (may be written HS—) STRUCTURE The amino group (—NH 2) consists of a nitrogen atom bonded to two hydrogen atoms and to the carbon skeleton. NAME OF COMPOUND Phosphate The sulfhydryl group consists of a sulfur atom bonded to an atom of hydrogen; resembles a hydroxyl group in shape. Amines Thiols In a phosphate group, a phosphorus atom is bonded to four oxygen atoms; one oxygen is bonded to the carbon skeleton; two oxygens carry negative charges. The phosphate group P (—OPO 32–, abbreviated ) is an ionized form of a phosphoric acid group (—OPO 3 H 2; note the two hydrogens). Organic phosphates A methyl group consists of a carbon bonded to three hydrogen atoms. The methyl group may be attached to a carbon or to a different atom. Methylated compounds EXAMPLE Glycine Because it also has a carboxyl group, glycine is both an amine and a carboxylic acid; compounds with both groups are called amino acids. FUNCTIONAL PROPERTIES Acts as a base; can pick up an H+ from the surrounding solution (water, in living organisms). (nonionized) (ionized) Ionized, with a charge of 1+, under cellular conditions. Glycerol phosphate Cysteine is an important sulfur-containing amino acid. Two sulfhydryl groups can react, forming a covalent bond. This “cross-linking” helps stabilize protein structure. Cross-linking of cysteines in hair proteins maintains the curliness or straightness of hair. Straight hair can be “permanently” curled by shaping it around curlers, then breaking and re-forming the cross-linking bonds. In addition to taking part in many important chemical reactions in cells, glycerol phosphate provides the backbone for phospholipids, the most prevalent molecules in cell membranes. Contributes negative charge to the molecule of which it is a part (2– when at the end of a molecule; 1– when located internally in a chain of phosphates). Has the potential to react with water, releasing energy. 5 -Methyl cytidine is a component of DNA that has been modified by addition of the methyl group. Addition of a methyl group to DNA, or to molecules bound to DNA, affects expression of genes. Arrangement of methyl groups in male and female sex hormones affects their shape and function.
Fig. 4 -10 c Carboxyl STRUCTURE Carboxylic acids, or organic acids EXAMPLE Has acidic properties because the covalent bond between oxygen and hydrogen is so polar; for example, Acetic acid, which gives vinegar its sour taste Acetic acid Acetate ion Found in cells in the ionized form with a charge of 1– and called a carboxylate ion (here, specifically, the acetate ion). NAME OF COMPOUND FUNCTIONAL PROPERTIES
Fig. 4 -10 d Amino STRUCTURE NAME OF COMPOUND Amines EXAMPLE Glycine Because it also has a carboxyl group, glycine is both an amine and a carboxylic acid; compounds with both groups are called amino acids. Acts as a base; can pick up an H+ from the surrounding solution (water, in living organisms). (nonionized) (ionized) Ionized, with a charge of 1+, under cellular conditions. FUNCTIONAL PROPERTIES
Fig. 4 -10 e Sulfhydryl STRUCTURE Thiols NAME OF COMPOUND (may be written HS—) EXAMPLE Two sulfhydryl groups can react, forming a covalent bond. This “cross-linking” helps stabilize protein structure. Cysteine is an important sulfur-containing amino acid. Cross-linking of cysteines in hair proteins maintains the curliness or straightness of hair. Straight hair can be “permanently” curled by shaping it around curlers, then breaking and re-forming the cross-linking bonds. FUNCTIONAL PROPERTIES
Fig. 4 -10 f Phosphate STRUCTURE Organic phosphates EXAMPLE Glycerol phosphate In addition to taking part in many important chemical reactions in cells, glycerol phosphate provides the backbone for phospholipids, the most prevalent molecules in cell membranes. Contributes negative charge to the molecule of which it is a part (2– when at the end of a molecule; 1– when located internally in a chain of phosphates). Has the potential to react with water, releasing energy. NAME OF COMPOUND FUNCTIONAL PROPERTIES
Fig. 4 -10 g Methyl STRUCTURE Methylated compounds EXAMPLE Addition of a methyl group to DNA, or to molecules bound to DNA, affects expression of genes. 5 -Methyl cytidine is a component of DNA that has been modified by addition of the methyl group. Arrangement of methyl groups in male and female sex hormones affects their shape and function. NAME OF COMPOUND FUNCTIONAL PROPERTIES
Ученые, которые участвовали в открытии структуры ДНК James Watson and Francis Crick, UK Maurice Wilkins, NZ Erwin Chargaff, Ukraine Rosalind Franklin, UK Linus Pauling, USA
Первое правило Чаргафа: В природной ДНК количество единиц гуанина равно количеству единиц цитозина, тогда как количество единиц аденина равно количеству единиц тимина. В типичной ДНК эукариот (пример: ДНК человека): A=30. 9%, T=29. 4%; Г=19. 9% Ц=19. 8%.
Pyrimidines: Purines : uracil, cytosine, thiamine Adenine, guanosine
Структура оснований в ДНК и РНК: пиримидины: пурины: урацил, цитозин, тиамин аденин, гуанозин
Nucleotide Nucleoside нуклеотид нуклеозид
Разница в сахаре в нуклеиновых кислотах:
Other functions of nucleotides Showing the sugar phosphate backbone of nucleic acids
Study this carefully to memorize general structure and nomenclature.
Размеры спирали: Водородные связи: Пространстенное расположение частей (по цветам):
Hydrogen bonding between bases important in double helix. Two between A and T; three between G and C.
DNA to RNA to protein: a diagrammatic overview of information flow in a cell. Both DNA and RNA are nucleic acids
m. RNA is translated into a polypeptide/protein in the cytoplasm. Ribosomes are composed of RNA and protein Campbell and Reece 8 Figure 17. 20 Polyribosomes
Transfer RNA is an adaptor molecule bringing in amino acids in the synthesis of protein. Campbell and Reece Figure 17. 14 The structure of transfer RNA (t. RNA).
These first three are the types of RNA that you need to know about: m. RNA t. RNA r. RNA Campbell and Reece 8 Chapter 17
What is this reaction called? Proteins Making a polypeptide chain Amino acids are linked by the formation of a peptide bond Note the different side chains of the amino acids
The primary structure of a protein is the sequence of amino acids This is the enzyme lysozyme There is an amino terminal to the protein, which has an amino group. The end of the protein has a carboxyl group.
Campbell and Reece Figure 5. 19 Conformation of the enzyme lysozyme. Two types of model, the ribbon model and the space filling model The substrate molecule in bacterial cell walls binds in the groove
Campbell and Reece 8 Figure 5. 21 Exploring levels of protein structure.
Campbell and Reece 8 Figure 5. 21 The quarternary structure of proteins.
Heat, low/high p. H Campbell and Reece 8 Fig 5. 23 Denaturation and renaturation of a protein
Protein structure and protein-protein interactions are important in viral particle structure Essential Cell Biology 2
Examples of relative sizes and shapes of different proteins Compare the size and general shape of: collagen, catalase and chymotrypsin
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Lecture_1_Gene_amp_amp_protein_technologies.ppt