GBIF European Regional Nodes Meeting 2013 Thematic Node Manager Sónia Dias Research Programme Officer EURISCO Coordinator Bioversity International GBIF European Regional Nodes Meeting 2013. The Finish Digitarium, 6 – 8 March, Joensuu, Finland
http: eurisco. ecpgr. org
• Providing technical support for the creation/development of National PGR Inventories • Develop and maintain an European PGR Search Catalogue with passport data on ex situ collections maintained in Europe by: ühaving the possibility to frequently update the Catalogue from the National PGR Inventories üproviding easy access to information on PGR maintained ex situ in Europe, thus facilitate locating and accessing it. • Assisting countries in meeting national obligations and commitments to: üthe ITPGRFA (namely Art. 5, 12, 13, 14, 16 and 17) üthe FAO (namely GPA Priority Activity 17) üthe CBD (namely Art. 7; 9; 17) ü…, among others … http: //eurisco. ecpgr. org
+ Cyprus + Israel http: //eurisco. ecpgr. org
Data quality controls and reporting
Facing the reality GIS Taxonomy Data Analysis Data Sharing Data Management Data Capture Quality and Quality http: //eurisco. ecpgr. org
2012 2010 31% 35%
0. 6% 2. 2% 0. 2% 12. 3% 13. 2% 0. 3% 0. 9% 6. 4% 7. 1% 6. 1% 44. 0% 0. 6% Armenia Austria Cyprus Czech Republic Estonia Germany Ireland Netherlands Nordic Countries Poland Portugal Spain Switzerland 2010 MLS registration in 2011 is 22. 5% of the total EURISCO accessions, covering around 65% of the species from Annex I of the ITPGRFA
National Inventories Genebanks Country sources Wild species Breeding/research material Traditional cultivars/landraces Improved cultivars International Treaty (MLS) Species Genera Geo-references, etc Total 43 Countries 325 220 107, 872 accessions 161, 664 accessions 273, 951 accessions 207, 494 accessions 251, 335 accessions >35, 200 > 5, 300 1, 112, 779 accessions
@Bioversity and satellite databases Pillars to information GENESYS CWR-P Trait IP Germplasm databases EURISCO EUFGIS
Next…relevance to science! Climate change Mitigation Food security Breeding & Research Traits of interest Evaluation/ measureme nt Scales and methods Diversity Genetic resources Accessions Ex situ CWR In situ Landraces On farm Traits ontologies Genotype And to policy: EU, CBD- Aichi Targets, ITPGRFA, Nagoya Protocol, GSPC, IPBES… also linking with other regional and interregional initiatives
- Node niche - biodiversity monitoring / open data platform / science and research services –PGR - CWR and LR-In situ and on farm inventories conservation strategies - Development backend, infrastructure - accommodating phenotypic, environmental, data + Cyprus + Israel - Ontologies driven - Enhanced quality control system and features - linkages with other data types- genomics… - Outreach - Website, e-bulletin, support, helpdesk - Training on demand (opportunistic) -documentation
Vision: a Global Agrobiodiversity Information Facility
In situ and On farm PGR Secure “Novel characterization of crop wild relative and landrace resources as a basis for improved crop breeding” http: //www. pgrsecure. org/
Objective • To produce a web-based CWR and LR Trait Information Portal – TIP (Task 2. 1) (a) provide useful trait information (phenomics, genomics and transcriptomics data) on European CWR and LR diversity, particularly for the case study genera, Avena, Beta, Brassica and Medicago; (b) provide baseline biodiversity information on CWR and LR diversity and its conservation; (c) establish links with related existing information systems regarding genomic characterization and ensure integration with other relevant plant genetic resources for food and……. Work package 2: Informatics Lead partner: BIOVER. ; all partners involved
TIP platform Mong DB Neo 4 j Ontologies – annotation, data collation …. http: //www. pgrsecure. bham. ac. uk/sites/default/files/documents/newsletters/CWR_Issue_8. pdf (page 28)
Looking forward • • • Data quality, Data digitalization, Data analysis Upload processes and system, Ontologies, Open data platform Biodiversity monitoring, Contribute use cases Science and research services ABD knowledge base ABD Informatics Consortium: standards, methodology and software for ABD/PGR • In Situ and on Farm CWR and LR Trait Information Portal-PGR Secure project (www. pgrsecure. org ) – High relevance for policy and science needs – Inventories – Checklist – Conservation strategies – Trait information
Contributors Thanks Milko Skofic EURISCO Network National Focal Points
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