Cyber Science Infrastructure for Boosting e-Science in Japan Jun Adachi & Masamitsu Negishi National Institute of Informatics, Japan NII October 23, 2006 CODATA 2006 @ Beijing, China 1
Cyber Science Infrastructure: background p A new information infrastructure is needed for boosting today’s advanced scientific research. Ø Integrated information resources and system • super computer and high-performance computing facilities, • software， • Scientific databases and digital contents such as e-journals • “Humans” and research processes themselves Ø Shared Cyber-Infrastructure in USA and e-infrastructure in Europe p Break-through of research methodology is required in various fields such as nano science, bio-science, etc. Ø the key to industry and academia cooperation: To promote ‘Intellectual manufacturing’ based on ‘Science’ Advanced information infrastructure for research will be the key in international cooperation and competition in future science and industrial fields A new comprehensive framework of information infrastructure in Japan Cyber Science Infrastructure CSI 2 National Institute of Informatics
CSI Architecture Cyber Science Infrastructure Virtual Research Organization over CSI Development of Human resources and skills Development of Scholarly digital contents and institutional repositories Middlewares Deployment of Research Grid Softwares for collaborative utilization of super-computers International contributions Industrial and social contributions Construction of new software and databases University PKI Initiative for secure and reliable infrastructure Next-Generation High Speed Network: SINET 3 3 National Institute of Informatics
Three key measures for CSI implementation p Network infrastructure deployment through SINET 3, UPKI and Grid software development, p Acquisition, compilation and dissemination of academic digital contents in cooperation with university libraries, p E-Science promotion for creation of new scientific values. 4 National Institute of Informatics
Japanese Academic Information Network（ SINET/Super. SINET ） Circuit Speed SINET(44 nodes) 1 Gbps Super SINET (35 nodes) 10 Gbps U. S. A： 10 Gbps× 1 2. 4 Gbps× 1 Singapore： 622 Mbps× 1 Hong Kong： 622 Mbps× 1 International Line Collaboration with other global network Kitami Institute of Technology Hokkaido University Hirosaki University (1) “lifeline” for educaional and research activities in Japan (2) Indispensable for advanced research cooperation Niigata University Japan Advanced Institute of Science and Technology Kanazawa Univ. (3) Continuous development towards the establishment of the full-fledged CSI Tottori Univ. Fukui Univ. Kyoto Univ. Hiroshima Univ. Kyushu Institute of Technology Kyushu Univ. Nagasaki Univ. Tohoku University Gunma University High-energy Accelerator Research Saitama University Organization Univ. of Electro-Communications Univ. of Ttskuba Shinshu Univ. National Astronomical Observatory of Japan National Institute Yamanashi. Tokyo Univ. for Waseda Univ. Agriculture Fusion Science Univ. of Tokyo And Technology NII National Institute of Informatics Toyama Univ. Chiba University Shizuoka Univ. Tokyo Institute of Technology Kobe Univ. Osaka Univ. Nagoya Univ. National Institute of Statistical Mathematics Kansai Univ. Doshisha Univ. Yokohama National Univ. Keio Univ. Of Natural Science Kagawa Univ. Japan Agency for Japan Aerospace Exploration Agency Institute Marine-Earth Science Univ. of Tokushima of Space and Astronautical Technology Science Okayama Univ. Yamaguchi Univ. Oita Univ. Ehime Univ. Kumamoto Univ. Kagoshima Univ. Participation SINET Institutions（as of October 2005） Univ. of the Ryukyu National Univ. Public Univ. Private Univ. Junior College Technical College Inter-univ. institute Others Total 82 48 266 78 42 14 184 713 5 National Institute of Informatics
Academic Networking of SINET(Asia） and Partners 6 National Institute of Informatics
Sample Research Activities on CSI p Widely distributed data analysis system Ø High-energy Physics Institute and universities p Multi-scale simulation system Ø Utilization of the “Earth Simulator” super-computer p Large-scale design simulation system Ø For nano-technology researches p Widely distributed database system Ø Genetics database sharing p Remote analysis of observation data Ø VLBI in astronomy 7 National Institute of Informatics
NAREGI: National Grid Initiative Project Leader (Dr. K. Miura, NII) 8
Adaptation of Nano-science Applications to Grid Environment MPICH-G 2, Globus IMS RISM NII Super SINET Electronic Structure in Solutions Solvent Distribution Analysis Grid Middleware RISM Reference Interaction Site Model FMO Electronic Structure Analysis Data Transformation between Different. Globus MPICH-G 2, Meshes Grid Middleware FMO Fragment Molecular Orbital method 9
University Public Key Infrastructure Initiative • To facilitate interoperability of CSI and Grid middleware among universities. • To deploy a collaborative system for campus-wide and inter-university authentication and authorization systems, aiming at: – E-journal use over universities – Super-computer use with Grid software • Financial support of the Ministry of Education from 2006 10
Scholarly Digital Contents and NII Aiming at: Stable dissemination, preservation and provision of information produced by academic communities Precise and timely service of information that academic communities require. 学術コミュニティ Academic communities （researchers , universities, academic societies, etc） （研究者、大学、学会、一般市民） supporting Cyber Science Infrastructure: CSI Networking ＋ Digital contents ＋ Research Activities Scholarly digital contents are common property among universities and NII-REO Institutional Repositories l. Archive server for university library consorstium l“last resort” of scholarly e-journals l 1, 053 titles including 2. 3 million articles, such as Springer and OUP l. Dissemination of univerisity information and research results l. Linkage with REO and ELS l. Linkage to open access journals and green journals NII-ELS l. E-journals of Japanese academic societies and university bulletin l. Retrospective digitization as an earchive l 1, 915 titles including 2. 7 million articles NII＋Universities National Institute of Informatics 11
Scholarly Information - Search Service Webcat Plus Search by theme Webcat Plus enables you to; u. Narrow search to more relevant info. u. Search books from various areas u. Find unexpected good books Search by keyword or phrase in theme ? Search by title, author, year or ISBN How can I get that book? Search by title or Author Registered data: about 12, 000 (as of Oct. 2005) Page views: about 60 million / year (FY 2004) What is the content of the book? Detailed info ・Table of contents ・Substance ・Title, Author, Publisher, Year, Pages, Size，…… List of libraries that hold the book Which library has the book? Library info ・Address， URL ・Terms of use http: //webcatplus. nii. ac. jp/ 12 National Institute of Informatics
Dissemination of Academic digital contents Ci. Nii (NII Article Information Navigator) Full texts (PDF) Large scale database for articles 【 1, 900 journals; 2. 7 million papers 】 【 18, 000 journals; 9. 3 million papers】 Japanese Academic Journals Research Bulletins Japanese Periodicals Index of NDL Links to Collected information from books and jornals Citation links 【 1, 700 journals; 700, 000 papers】 Portal site of article information http: //ci. nii. ac. jp/ Indication of references cited 13 National Institute of Informatics
Scholarly Information : Compilation/dissemination NII started collaborative project for Institutional Repositories with 19 major universities in 2005, and 57 universities in 2006. 【 What is an Institutional Repository ? 】 Universities Authors Accumulation and dissemination of electronic intellectual properties that academic institutes produce Submission of research results Libraries ・Scholarly / preprinted papers, theses ・Reports on Grant-in-Aid Scientific Research, technical papers ・Presentation slides used at an academic conferences, electronic materials for students 【in NII】 Institutional Repository Metadata Database Support for collaboration of Institutional Repositories ・Automatic harvesting of information in Institutional Repository ・Storage in NII’s meta-database ・Provision of integrated retrieval service Support for creation of Institutional Repositories Project with university libraries Metadata harvesting By OAI-PMH Access NII Integrated search Search Users 14 National Institute of Informatics
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