C 3 - Bioinformatics Support for Harvard Researchers Reddy Gali
What kind of support • • • Education Support / Consulting Outreach Informatics Collaboration
Education - Workshops • • • Introduction to Microarrays and affymetrix data analysis Metacore Pathway Analysis Metadrug – Compound based pathway analysis Transcription Factor Analysis using Ex. Plain, Trans. Fac and Transpro Biobase- Biological Knowledge Library Ingenuity Pathway Analysis Sequence Alignment – BLAST & Clustal Genome Browsing Introduction to R/Bioconductor ENSEMBL Fundamentals in Matlab
Education –Workshops • • • Illumina gene expression array analysis using Bioconductor/R Two Channel / c. DNA gene expression analysis Integrative Genomics Viewer - Exploration of large integrated sequence and genomic datasets c. DNA microarray analysis Perl and Bio. Perl for Biologists Biomedical Imaging Analysis Expression analysis using Gene. Pattern Micro. RNAs Analysis Illumina Microarray data analysis
Education - Signup
Education - Signup
Education - Signup
Collaboration - Workshops • • • Josiah Altschuler– DFCI Deepti Anand – Joslin Amir Karger – FAS -RC Steven Finch – FAS-Statistics Helga Thorvaldsdottir - MIT Ravi Gutti – Children’s Raymond Didanato - Biobase Michael Reich – Broad MIT Galina Gabriel– Children’s
Collaboration - Workshops • • Anosha Siripala - Genego Nipun Patel – MGH Aedin Culhane – DFCI Reddy Gali – CBMI/Countway David Osterbur – CBMI/Countway Paul Bain – CBMI/Countway Lellean Je. Bailey – Genego
Collaboration - Projects • Research Projects – Gene Expression – High fat diet in Pigs - BIDMC – Cord and Peripheral blood cells in Humans. Children’s – m. RNA house keeping genes– Children’s
Support / Consulting • HMS • HSDM • BWH • BIDMC • CH • Joslin • FAS • MGH • CBMI • HSPH
Outreach Harvard Catalyst Site Harvard Catalyst e-mail Word of Mouth / Flyers ABCD e-mail lists
November 2009 – June 2010 55 bioinformatics workshops ~ 1000 attendees 110 consulting sessions – 50 distinct users 99 RT tickets since February
C 3 Bioinformatics Flyer
Thank you
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